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  "Package": "naryn",
  "Title": "Native Access Medical Record Retriever for High Yield Analytics",
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  "Description": "A toolkit for medical records data analysis. The 'naryn'\npackage implements an efficient data structure for storing\nmedical records, and provides a set of functions for data\nextraction, manipulation and analysis.",
  "License": "MIT + file LICENSE",
  "URL": "https://tanaylab.github.io/naryn/",
  "BugReports": "https://github.com/tanaylab/naryn/issues",
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  "Encoding": "UTF-8",
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  "Repository": "https://tanaylab.r-universe.dev",
  "Date/Publication": "2026-05-12 09:44:57 UTC",
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    "committer": "aviezerl <aviezer.lifshitz@weizmann.ac.il>",
    "message": "Merge fix@nfs-stalls-atomic-rename into master (med-school backend alignment 2026-05-12)\n\n# Conflicts:\n#\t.Rbuildignore\n#\t.gitignore\n#\tDESCRIPTION\n#\tNEWS.md\n",
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  "_updates": [
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      "name": "v2.6.34",
      "date": "2026-03-19"
    }
  ],
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    "data-analysis",
    "medical-records",
    "cpp"
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/naryn"
  },
  "_devurl": "https://github.com/tanaylab/naryn",
  "_pkgdown": "https://tanaylab.github.io/naryn/",
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/naryn.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/tanaylab/naryn",
  "_realowner": "tanaylab",
  "_cranurl": true,
  "_releases": [
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      "version": "2.6.9",
      "date": "2022-10-13"
    },
    {
      "version": "2.6.12",
      "date": "2022-11-22"
    },
    {
      "version": "2.6.13",
      "date": "2022-12-14"
    },
    {
      "version": "2.6.14",
      "date": "2023-01-09"
    },
    {
      "version": "2.6.21",
      "date": "2023-06-02"
    },
    {
      "version": "2.6.23",
      "date": "2023-08-18"
    },
    {
      "version": "2.6.25",
      "date": "2023-11-30"
    },
    {
      "version": "2.6.26",
      "date": "2024-01-15"
    },
    {
      "version": "2.6.30",
      "date": "2024-09-27"
    },
    {
      "version": "2.6.31",
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    },
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  "_exports": [
    ".create_logical_track_filter",
    ".emr_expr_vars",
    ".emr_filter",
    ".emr_vtrack.get",
    ".naryn",
    "%>%",
    "day",
    "days",
    "emr_annotate",
    "emr_char2time",
    "emr_cor",
    "emr_date2time",
    "emr_db.connect",
    "emr_db.init",
    "emr_db.init_examples",
    "emr_db.ls",
    "emr_db.reload",
    "emr_db.subset",
    "emr_db.subset.ids",
    "emr_db.subset.info",
    "emr_db.unload",
    "emr_dist",
    "emr_download_example_data",
    "emr_entries.get",
    "emr_entries.get_all",
    "emr_entries.ls",
    "emr_entries.reload",
    "emr_entries.rm",
    "emr_entries.rm_all",
    "emr_entries.set",
    "emr_extract",
    "emr_filter.attr.expiration",
    "emr_filter.attr.keepref",
    "emr_filter.attr.src",
    "emr_filter.attr.time.shift",
    "emr_filter.attr.val",
    "emr_filter.clear",
    "emr_filter.create",
    "emr_filter.create_from_name",
    "emr_filter.exists",
    "emr_filter.info",
    "emr_filter.ls",
    "emr_filter.name",
    "emr_filter.rm",
    "emr_filters.info",
    "emr_ids_coverage",
    "emr_ids_vals_coverage",
    "emr_monthly_iterator",
    "emr_posix2time",
    "emr_quantiles",
    "emr_screen",
    "emr_summary",
    "emr_time",
    "emr_time2char",
    "emr_time2date",
    "emr_time2dayofmonth",
    "emr_time2hour",
    "emr_time2month",
    "emr_time2posix",
    "emr_time2year",
    "emr_track.addto",
    "emr_track.attr.export",
    "emr_track.attr.get",
    "emr_track.attr.rm",
    "emr_track.attr.set",
    "emr_track.create",
    "emr_track.current_db",
    "emr_track.dbs",
    "emr_track.exists",
    "emr_track.global.ls",
    "emr_track.ids",
    "emr_track.import",
    "emr_track.info",
    "emr_track.logical.create",
    "emr_track.logical.exists",
    "emr_track.logical.info",
    "emr_track.logical.ls",
    "emr_track.logical.rm",
    "emr_track.ls",
    "emr_track.mv",
    "emr_track.percentile",
    "emr_track.readonly",
    "emr_track.rm",
    "emr_track.unique",
    "emr_track.user.ls",
    "emr_track.var.get",
    "emr_track.var.ls",
    "emr_track.var.rm",
    "emr_track.var.set",
    "emr_vtrack.attr.filter",
    "emr_vtrack.attr.func",
    "emr_vtrack.attr.id.map",
    "emr_vtrack.attr.keepref",
    "emr_vtrack.attr.params",
    "emr_vtrack.attr.src",
    "emr_vtrack.attr.time.shift",
    "emr_vtrack.clear",
    "emr_vtrack.create",
    "emr_vtrack.create_from_name",
    "emr_vtrack.exists",
    "emr_vtrack.info",
    "emr_vtrack.ls",
    "emr_vtrack.name",
    "emr_vtrack.rm",
    "emr_yearly_iterator",
    "hour",
    "hours",
    "month",
    "months",
    "string_to_var",
    "var_to_string",
    "week",
    "weeks",
    "year",
    "years"
  ],
  "_help": [
    {
      "page": "naryn-package",
      "title": "Toolkit for medical records data analysis",
      "topics": [
        "naryn-package",
        "naryn"
      ]
    },
    {
      "page": "emr_annotate",
      "title": "Annotates id-time points table",
      "topics": [
        "emr_annotate"
      ]
    },
    {
      "page": "emr_cor",
      "title": "Calculates correlation statistics for pairs of track expressions",
      "topics": [
        "emr_cor"
      ]
    },
    {
      "page": "emr_date2time",
      "title": "Converts date and hour to internal time format",
      "topics": [
        "emr_date2time"
      ]
    },
    {
      "page": "emr_db.connect",
      "title": "Initializes connection with Naryn Database",
      "topics": [
        "emr_db.connect",
        "emr_db.init",
        "emr_db.init_examples",
        "emr_db.ls"
      ]
    },
    {
      "page": "emr_db.reload",
      "title": "Reloads database",
      "topics": [
        "emr_db.reload"
      ]
    },
    {
      "page": "emr_db.subset",
      "title": "Defines an ids subset",
      "topics": [
        "emr_db.subset"
      ]
    },
    {
      "page": "emr_db.subset.ids",
      "title": "Returns the ids that constitute the current ids subset",
      "topics": [
        "emr_db.subset.ids"
      ]
    },
    {
      "page": "emr_db.subset.info",
      "title": "Returns information about the current subset",
      "topics": [
        "emr_db.subset.info"
      ]
    },
    {
      "page": "emr_db.unload",
      "title": "Unload all tracks from naryn database",
      "topics": [
        "emr_db.unload"
      ]
    },
    {
      "page": "emr_dist",
      "title": "Calculates distribution of track expressions",
      "topics": [
        "emr_dist"
      ]
    },
    {
      "page": "emr_download_example_data",
      "title": "Download example database",
      "topics": [
        "emr_download_example_data"
      ]
    },
    {
      "page": "emr_entries.get",
      "title": "Get an entry",
      "topics": [
        "emr_entries.get"
      ]
    },
    {
      "page": "emr_entries.get_all",
      "title": "Get all entries",
      "topics": [
        "emr_entries.get_all"
      ]
    },
    {
      "page": "emr_entries.ls",
      "title": "List entries",
      "topics": [
        "emr_entries.ls"
      ]
    },
    {
      "page": "emr_entries.reload",
      "title": "Reload entries from disk",
      "topics": [
        "emr_entries.reload"
      ]
    },
    {
      "page": "emr_entries.rm",
      "title": "Remove an entry",
      "topics": [
        "emr_entries.rm"
      ]
    },
    {
      "page": "emr_entries.rm_all",
      "title": "Remove all entries",
      "topics": [
        "emr_entries.rm_all"
      ]
    },
    {
      "page": "emr_entries.set",
      "title": "Set an entry",
      "topics": [
        "emr_entries.set"
      ]
    },
    {
      "page": "emr_extract",
      "title": "Returns evaluated track expression",
      "topics": [
        "emr_extract"
      ]
    },
    {
      "page": "emr_filter.attr.src",
      "title": "Get or set attributes of a named filter",
      "topics": [
        "emr_filter.attr.expiration",
        "emr_filter.attr.keepref",
        "emr_filter.attr.src",
        "emr_filter.attr.time.shift",
        "emr_filter.attr.val"
      ]
    },
    {
      "page": "emr_filter.clear",
      "title": "Clear all filters from the current environment",
      "topics": [
        "emr_filter.clear"
      ]
    },
    {
      "page": "emr_filter.create",
      "title": "Creates a new named filter",
      "topics": [
        "emr_filter.create"
      ]
    },
    {
      "page": "emr_filter.create_from_name",
      "title": "Create a filter from an automatically generated name",
      "topics": [
        "emr_filter.create_from_name"
      ]
    },
    {
      "page": "emr_filter.exists",
      "title": "Checks whether the named filter exists",
      "topics": [
        "emr_filter.exists"
      ]
    },
    {
      "page": "emr_filter.info",
      "title": "Returns the definition of a named filter",
      "topics": [
        "emr_filter.info"
      ]
    },
    {
      "page": "emr_filter.ls",
      "title": "Returns a list of named filters",
      "topics": [
        "emr_filter.ls"
      ]
    },
    {
      "page": "emr_filter.name",
      "title": "Generate a default name for a naryn filter",
      "topics": [
        "emr_filter.name"
      ]
    },
    {
      "page": "emr_filter.rm",
      "title": "Deletes a named filter",
      "topics": [
        "emr_filter.rm"
      ]
    },
    {
      "page": "emr_filters.info",
      "title": "Returns the filter definition of named filters given a filter expression",
      "topics": [
        "emr_filters.info"
      ]
    },
    {
      "page": "emr_ids_coverage",
      "title": "Returns ids coverage per track",
      "topics": [
        "emr_ids_coverage"
      ]
    },
    {
      "page": "emr_ids_vals_coverage",
      "title": "Returns ids coverage per value track",
      "topics": [
        "emr_ids_vals_coverage"
      ]
    },
    {
      "page": "emr_monthly_iterator",
      "title": "Create an iterator that goes every year/month",
      "topics": [
        "emr_monthly_iterator",
        "emr_yearly_iterator"
      ]
    },
    {
      "page": "emr_quantiles",
      "title": "Calculates quantiles of a track expression",
      "topics": [
        "emr_quantiles"
      ]
    },
    {
      "page": "emr_screen",
      "title": "Finds Id-Time points that match track expression",
      "topics": [
        "emr_screen"
      ]
    },
    {
      "page": "emr_summary",
      "title": "Calculates summary statistics of track expression",
      "topics": [
        "emr_summary"
      ]
    },
    {
      "page": "emr_time",
      "title": "Convert time periods to internal time format",
      "topics": [
        "day",
        "days",
        "emr_time",
        "hour",
        "hours",
        "month",
        "months",
        "week",
        "weeks",
        "year",
        "years"
      ]
    },
    {
      "page": "emr_time2char",
      "title": "Convert time to character format",
      "topics": [
        "emr_char2time",
        "emr_time2char"
      ]
    },
    {
      "page": "emr_time2date",
      "title": "Convert from internal time to year, month, day, hour",
      "topics": [
        "emr_time2date"
      ]
    },
    {
      "page": "emr_time2dayofmonth",
      "title": "Converts time from internal format to a day of month",
      "topics": [
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      ]
    },
    {
      "page": "emr_time2hour",
      "title": "Converts time from internal format to an hour",
      "topics": [
        "emr_time2hour"
      ]
    },
    {
      "page": "emr_time2month",
      "title": "Converts time from internal format to a month",
      "topics": [
        "emr_time2month"
      ]
    },
    {
      "page": "emr_time2posix",
      "title": "Convert EMR time to POSIXct",
      "topics": [
        "emr_posix2time",
        "emr_time2posix"
      ]
    },
    {
      "page": "emr_time2year",
      "title": "Converts time from internal format to a year",
      "topics": [
        "emr_time2year"
      ]
    },
    {
      "page": "emr_track.addto",
      "title": "Adds new records to a track",
      "topics": [
        "emr_track.addto"
      ]
    },
    {
      "page": "emr_track.attr.export",
      "title": "Returns attributes values of tracks",
      "topics": [
        "emr_track.attr.export"
      ]
    },
    {
      "page": "emr_track.attr.get",
      "title": "Returns the value of the track attribute",
      "topics": [
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      ]
    },
    {
      "page": "emr_track.attr.rm",
      "title": "Deletes a track attribute",
      "topics": [
        "emr_track.attr.rm"
      ]
    },
    {
      "page": "emr_track.attr.set",
      "title": "Assigns a value to the track attribute",
      "topics": [
        "emr_track.attr.set"
      ]
    },
    {
      "page": "emr_track.create",
      "title": "Creates a track from a track expression",
      "topics": [
        "emr_track.create"
      ]
    },
    {
      "page": "emr_track.dbs",
      "title": "Returns a vector of db ids which have a version of the track",
      "topics": [
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        "emr_track.dbs"
      ]
    },
    {
      "page": "emr_track.exists",
      "title": "Checks whether the track exists",
      "topics": [
        "emr_track.exists"
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    },
    {
      "page": "emr_track.ids",
      "title": "Returns track ids",
      "topics": [
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      ]
    },
    {
      "page": "emr_track.import",
      "title": "Imports a track from a file or data-frame",
      "topics": [
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    },
    {
      "page": "emr_track.info",
      "title": "Returns information about the track.",
      "topics": [
        "emr_track.info"
      ]
    },
    {
      "page": "emr_track.logical.create",
      "title": "Creates a logical track",
      "topics": [
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    },
    {
      "page": "emr_track.logical.exists",
      "title": "Is a track logical",
      "topics": [
        "emr_track.logical.exists"
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    },
    {
      "page": "emr_track.logical.info",
      "title": "Returns information about a logical track",
      "topics": [
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    },
    {
      "page": "emr_track.logical.rm",
      "title": "Deletes a logical track",
      "topics": [
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    },
    {
      "page": "emr_track.ls",
      "title": "Returns a list of track names",
      "topics": [
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        "emr_track.logical.ls",
        "emr_track.ls",
        "emr_track.user.ls"
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    },
    {
      "page": "emr_track.mv",
      "title": "Moves (renames) a track",
      "topics": [
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      ]
    },
    {
      "page": "emr_track.percentile",
      "title": "Returns track percentile of the values",
      "topics": [
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      ]
    },
    {
      "page": "emr_track.readonly",
      "title": "Gets or sets \"read-only\" property of a track",
      "topics": [
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    {
      "page": "emr_track.rm",
      "title": "Deletes a track",
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    {
      "page": "emr_track.unique",
      "title": "Returns track values",
      "topics": [
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    },
    {
      "page": "emr_track.var.get",
      "title": "Returns value of a track variable",
      "topics": [
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    },
    {
      "page": "emr_track.var.ls",
      "title": "Returns a list of track variables for a track",
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    },
    {
      "page": "emr_track.var.rm",
      "title": "Deletes a track variable",
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    },
    {
      "page": "emr_track.var.set",
      "title": "Assigns value to a track variable",
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        "emr_vtrack.attr.src",
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    },
    {
      "page": "emr_vtrack.clear",
      "title": "Clear all virtual tracks from the current environment",
      "topics": [
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    },
    {
      "page": "emr_vtrack.create",
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    {
      "page": "emr_vtrack.create_from_name",
      "title": "Create a virtual track from an automatically generated name",
      "topics": [
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    },
    {
      "page": "emr_vtrack.exists",
      "title": "Checks whether the virtual track exists",
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      "page": "emr_vtrack.info",
      "title": "Returns the definition of a virtual track",
      "topics": [
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    {
      "page": "emr_vtrack.ls",
      "title": "Returns a list of virtual track names",
      "topics": [
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    },
    {
      "page": "emr_vtrack.name",
      "title": "Generate a default name for a virtual track",
      "topics": [
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    },
    {
      "page": "emr_vtrack.rm",
      "title": "Deletes a virtual track",
      "topics": [
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    },
    {
      "page": "string_to_var",
      "title": "Create a syntactically valid variable name from a string",
      "topics": [
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    },
    {
      "page": "var_to_string",
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      "source": "advanced.Rmd",
      "filename": "advanced.html",
      "title": "advanced naryn",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Database",
        "DB dirs, Namespaces and Read-Only Tracks",
        "Load-on-demand vs. Pre-load Modes",
        "Maintaining Database",
        "File and directory permissions",
        "Tracks",
        "Records and References",
        "Categorical and Quantitative Tracks",
        "Logical tracks",
        "Track Attributes",
        "Track Variables",
        "Track Attributes vs. Track Variables",
        "Subsets",
        "Accessing the Data",
        "Track Expressions",
        "Run-time Track Variable is a Vector",
        "Matching Reference in the Track Expression",
        "Virtual Tracks",
        "Iterators",
        "Track Iterator",
        "Id-Time Points Iterator",
        "Ids Iterator",
        "Time Intervals Iterator",
        "Id-Time Intervals Iterator",
        "Beat Iterator",
        "Extended Beat Iterator",
        "Periodic Iterator",
        "Implicit Iterator",
        "Revealing Current Iterator Time",
        "Filters",
        "Named Filters",
        "Other Objects within Filters",
        "Managing Reference in Filters",
        "Advanced Naryn",
        "Random Algorithms",
        "Multitasking",
        "Appendix",
        "R vs. Python Interface Differences",
        "Options",
        "Common Table Formats",
        "Id-Time Points Table",
        "Id-Time Values Table",
        "Ids Table",
        "Time Intervals Table",
        "Id-Time Intervals Table"
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      "created": "2022-10-03 06:04:24",
      "modified": "2022-11-21 14:32:05",
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