Package: shaman
Type: Package
Title: Sampling Hi-C Contact Matrices for Aparametric Normalization
Version: 2.1.1.9000
Authors@R: c(person("Amos", "Tanay", role=c("aut")),
    person("Netta", "Mendelson Cohen", email="netta.mendelsoncohen@weizmann.ac.il",
    role=c("aut")),
    person("Aviezer", "Lifshitz", email="aviezer.lifshitz@weizmann.ac.il",
    role=c("aut", "cre")),
    person("Weizmann Institute of Science", role="cph"))
Description: Generate expected Hi-C (genome-wide chromosome
        conformation capture) data maintaining marginal coverage, and
        the decay in contact probability with increasing genomic
        distance. Expected Hi-C data is used for normalization and
        graphical presentation of statistical significance of observed
        Hi-C contact enrichments. The method is described in Mendelson
        Cohen et al. (2017) <doi:10.1101/187203>.
License: GPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
LinkingTo: Rcpp
SystemRequirements: C++17
Suggests: knitr, testthat, rmarkdown, Gviz, foreach
VignetteBuilder: rmarkdown, knitr
Depends: R (>= 4.0.0)
Imports: misha (>= 3.5.6), Rcpp (>= 0.12.11), RANN, data.table, ggplot2
        (>= 3.4.0), reshape2, grid, plyr, parallel
URL: https://tanaylab.github.io/shaman/,
        https://github.com/tanaylab/shaman
OS_type: unix
BugReports: https://github.com/tanaylab/shaman/issues
Config/pak/sysreqs: libicu-dev libssl-dev zlib1g-dev
Repository: https://tanaylab.r-universe.dev
Date/Publication: 2026-10-18 11:18:20 UTC
RemoteUrl: https://github.com/tanaylab/shaman
RemoteRef: HEAD
RemoteSha: 20d2041c9b5d2f508c49983f1bc697b2feb915b5
NeedsCompilation: yes
Packaged: 2026-10-18 11:28:13 UTC; root
Author: Amos Tanay [aut],
  Netta Mendelson Cohen [aut],
  Aviezer Lifshitz [aut, cre],
  Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>