# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "shaman" in publications use:'
type: software
license: GPL-1.0-only
title: 'shaman: Sampling Hi-C Contact Matrices for Aparametric Normalization'
version: 2.1.1.9000
doi: 10.1101/187203
identifiers:
- type: doi
  value: 10.32614/CRAN.package.shaman
abstract: Generate expected Hi-C (genome-wide chromosome conformation capture) data
  maintaining marginal coverage, and the decay in contact probability with increasing
  genomic distance. Expected Hi-C data is used for normalization and graphical presentation
  of statistical significance of observed Hi-C contact enrichments. The method is
  described in Mendelson Cohen et al. (2017) <https://doi.org/10.1101/187203>.
authors:
- family-names: Tanay
  given-names: Amos
- family-names: Mendelson Cohen
  given-names: Netta
  email: netta.mendelsoncohen@weizmann.ac.il
- family-names: Lifshitz
  given-names: Aviezer
  email: aviezer.lifshitz@weizmann.ac.il
preferred-citation:
  type: article
  title: 'SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices'
  authors:
  - family-names: Mendelson Cohen
    given-names: Netta
    email: netta.mendelsoncohen@weizmann.ac.il
  - family-names: Olivares-Chauvet
    given-names: Pedro
  - family-names: Lubling
    given-names: Yaniv
  - family-names: Baran
    given-names: Yael
  - family-names: Lifshitz
    given-names: Aviezer
    email: aviezer.lifshitz@weizmann.ac.il
  - family-names: Hoichman
    given-names: Michael
  - family-names: Tanay
    given-names: Amos
  journal: bioRxiv
  year: '2017'
  doi: 10.1101/187203
  url: https://www.biorxiv.org/content/10.1101/187203v1
repository: https://tanaylab.r-universe.dev
repository-code: https://github.com/tanaylab/shaman
commit: 20d2041c9b5d2f508c49983f1bc697b2feb915b5
url: https://tanaylab.github.io/shaman/
date-released: '2026-10-18'
contact:
- family-names: Lifshitz
  given-names: Aviezer
  email: aviezer.lifshitz@weizmann.ac.il