Package: slanter 0.2-0

Oren Ben-Kiki

slanter: Slanted Matrices and Ordered Clustering

Slanted matrices and ordered clustering for better visualization of similarity data.

Authors:Oren Ben-Kiki [aut, cre], Weizmann Institute of Science [cph]

# Install 'slanter' in R:

install.packages('slanter', repos = c('https://tanaylab.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

meristems - Sample RNA data of similarity between batches of 1000 cells of tomato meristem cells.

On CRAN:

Last updated from:d432404409. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	112
source / vignettes	OK	166
linux-release-x86_64	WARNING	3224
macos-release-arm64	WARNING	95
macos-oldrel-arm64	WARNING	80
windows-devel	WARNING	83
windows-release	WARNING	91
windows-oldrel	WARNING	71
wasm-release	OK	105

Last update: 2020-12-03
Started: 2020-08-08

Help page	Topics
Sample RNA data of similarity between batches of 1000 cells of tomato meristem cells.	meristems
Hierarchically cluster ordered data.	oclust
Reorder the rows of a frame.	reorder_frame
Given a clustering of some data, and some ideal order we'd like to use to visualize it, reorder (but do not modify) the clustering to be as consistent as possible with this ideal order.	reorder_hclust
Plot a heatmap with values as close to the diagonal as possible.	sheatmap
Compute rows and columns orders which move high values close to the diagonal.	slanted_orders
Reorder data rows and columns to move high values close to the diagonal.	slanted_reorder