Package: slanter 0.2-0

Oren Ben-Kiki

slanter: Slanted Matrices and Ordered Clustering

Slanted matrices and ordered clustering for better visualization of similarity data.

Authors:Oren Ben-Kiki [aut, cre], Weizmann Institute of Science [cph]

# Install 'slanter' in R:

install.packages('slanter', repos = c('https://tanaylab.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

meristems - Sample RNA data of similarity between batches of 1000 cells of tomato meristem cells.

On CRAN:

Last updated 4 years agofrom:d432404409. Checks:1 OK, 7 WARNING. Indexed: yes.

Oren Ben-Kiki

Last update: 2020-12-03
Started: 2020-08-08

Help page	Topics
Sample RNA data of similarity between batches of 1000 cells of tomato meristem cells.	meristems
Hierarchically cluster ordered data.	oclust
Reorder the rows of a frame.	reorder_frame
Given a clustering of some data, and some ideal order we'd like to use to visualize it, reorder (but do not modify) the clustering to be as consistent as possible with this ideal order.	reorder_hclust
Plot a heatmap with values as close to the diagonal as possible.	sheatmap
Compute rows and columns orders which move high values close to the diagonal.	slanted_orders
Reorder data rows and columns to move high values close to the diagonal.	slanted_reorder